PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02677 FitnessBrowser__Smeli:SMc02677 (272 amino acids)

SeqID: SMc02677 FitnessBrowser__Smeli:SMc02677
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71159808: Pyrroline-5-carboxylate reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02677 FitnessBrowser__Smeli:SMc02677
MSIAVSGPIVLVGAGNMGGAMLAGWLKSGVRGSDVLVIDPGPSPAMAKLLADSGVQHATS
APAGGKAGAIFLAVKPQVMETVLPPLKGLVGPQTVIVSVAAGKTLGFIERHLGEAATVRA
MPNTPAMIGRGVTGAFANARVSEAQRALVHDLLKVSGPVEWVGSEADIDAVTAVSGSGPA
YVFYLVECMAEAGRKAGLEADLAMRLARETVAGAGELLHQSPDDAARLRQNVTSPGGTTA
AALAVLMADDGMQPLFDRAIAAARKRAEELAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory