PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02686 FitnessBrowser__Smeli:SMc02686 (310 amino acids)

SeqID: SMc02686 FitnessBrowser__Smeli:SMc02686
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67466690: Ribose-phosphate pyrophosphokinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02686 FitnessBrowser__Smeli:SMc02686
MKVFAGNSNRLLAEAICNYLNLPLGKATVRRFADQEIFVEIGENVRGEDVFIVQSTSFPT
NDHLMELLIMIDAVRRSSARRITAVLPYFGYARQDRKPGPRTPISAKLVANLITEAGADR
VLTLDLHAGQIQGFFDIPTDNLYAIPILARDVKENYNLKNVMVVSPDVGGVVRARALAKR
LDCLLAIVDKRRDRPGESEVMNVIGEVNGKDCLLIDDIVDSGGTLCNAAEALLKNGATSV
TAYITHGVLSGGAVARVTSSMLKELVITDSIQPTTAVQSAHNIRVISTAALLGEAISRTS
QEESVSSLFD