PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02877 FitnessBrowser__Smeli:SMc02877 (340 amino acids)

SeqID: SMc02877 FitnessBrowser__Smeli:SMc02877
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 62297827: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02877 FitnessBrowser__Smeli:SMc02877
MQTNMRREIDEIPEAAARLLERSATRLAQAGAALRAKDPAFLVTIARGSSDHAALFLKYA
IELTTGRPVASLGPSLASIYGADLKLGGAAAIAISQSGKSPDIVAMAEAATRAGAVSIAL
TNTLPSPIAEACTHPLDILAGPEIAVAATKSYVNSIVAGLAVLGEWTGDATLKHAVADLP
NQLAKAVKLDWQDFAGDLAEAESLYVLGRGPALAIASEAALKFKETSGMHAEAYSAAEVL
HGPVALVGHRFPVLVLAARDAAEASVADIADGMSAKGAVVHVTSARAGKAKRLPFVETGH
PLTDALALILPFYGFVEAWSRSRGLNPDAPENLKKVTETR