PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02983 SMc02983 ornithine, DAP, or arginine decarboxylase (379 amino acids)

SeqID: SMc02983 SMc02983 ornithine, DAP, or arginine decarboxylase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599715: ornithine decarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02983 SMc02983 ornithine, DAP, or arginine decarboxylase
MAMTTARIIDFLNTRRPEGPCLVVDLDVVRDNFKAFRHALPDSAIYYAVKANPAPEILRL
LAGLGSNFDCASVAEIEMALDAGATPNRISYGNTIKKERDVARAHALGISLFAVDSHEEV
EKIARAAPGARVFCRVLTDGEGAEWPLSRKFGCVPQMAVDVLVYAHQLGLVSYGVSFHVG
SQMTKLDAWDAALADAKRVFVQLAKQGIELKMVNMGGGFPTKYLRDVPSAEAYGQAIFGA
LKKHFGNNIPETIIEPGRGMVGNAGVIKAEVVLVSKKSDNDSHRWVFLDIGKFGGLAETM
DEAIRYPIRTARDADAMEPCVLAGPTCDSADVLYEKNMYPLPISLTIGDEVLIEGTGAYT
TTYSAVAFNGFEPLKAYVI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory