PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03127 FitnessBrowser__Smeli:SMc03127 (308 amino acids)

SeqID: SMc03127 FitnessBrowser__Smeli:SMc03127
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [7 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3183460: Glutathione transport system permease protein gsiC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03127 FitnessBrowser__Smeli:SMc03127
MIRFVLVRLMRAVITILAVVTFAFVVLRMSGDPAQVMLGPDVPQDAVDAFRKTWGLDQPI
WIQYLAYIKSIFTGDFGVSMRDKASALHLVLERVPATLQLTLPALILKLMIGIPAGVYAA
LHRQSFADRGVITLAIIGFTVPSFVMGLVLVLIFSVLLGVLPSGGQDTWMHGILPTITMS
IGGIGILARFSRSAMIEVLGQPYIRTASAKGLKWRDVIWSHALPNAAVPIVTIVGFMVGS
LIAGAVVVESIFSWPGIGRLLIVSVSNRDLAVVQCILLIIAAAMVMSNLVVDLLYGWLDP
RLRSHAGH