PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03132 FitnessBrowser__Smeli:SMc03132 (426 amino acids)

SeqID: SMc03132 FitnessBrowser__Smeli:SMc03132
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03132 FitnessBrowser__Smeli:SMc03132
MSYPNTYYKQTIAETNVRPPLSGTVECDTVIIGGGLAGLTTALQLARAGQSVVVLEAESV
GFGASGRNGGFVSPGFATGSDNIARMAGTEAARQIHRLSIEGVEFVRETIEALKIDGARP
QPGITSVLRYDDGGSLKAHADEMRRIYGYELDYLSTGEVRSVLKSNRYFHALRDPKAFHM
HPLNYLRGLAREIERLGGRIYEGSAATGSVLDGAEKTVSTSGGRVRARHVVFTTGGYTGP
LNGRLKRSFLPIATYVMLSEEAPELIRTAIATTDAIGDNRRAGDYYRLVEGGKRLLWGGR
ITTRAASPAALAGELRREMVGTYPQLKDLKTELAWSGLMSYARHLMPQIGEMQPGVWHCT
AFGGHGLNTTAIGGKLVAEGILGQSDRYKLFKPFGLVWAGGYAGLAVAQLTYWKLQAQDW
WRERAA