PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03135 SMc03135 amino-acid transport system ATP-binding ABC transporter protein (251 amino acids)

SeqID: SMc03135 SMc03135 amino-acid transport system ATP-binding ABC transporter protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03135 SMc03135 amino-acid transport system ATP-binding ABC transporter protein
MPTSIDIASPEITLSGVHKWYGQYHALDDINLSIASREKVVICGPSGSGKSTLIRCVNRL
EAHQQGRIVVGGVEVGEDERKVDAIRREVGMVFQQFNLFPHLTILENCILAPMWVKRMPR
AQATEIAMDYLNRVRIPEQANKYPGQLSGGQQQRVAIARALCMNPKVMLFDEPTSALDPE
MVKEVLDTMVALANDGMTMVCVTHEMGFARQVADRVIFMDQGRIVEEGEPDEFFAHPKTD
RASLFLSQLLH