PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03157 FitnessBrowser__Smeli:SMc03157 (258 amino acids)

SeqID: SMc03157 FitnessBrowser__Smeli:SMc03157
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 128372: Lipoprotein 28 precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03157 FitnessBrowser__Smeli:SMc03157
MKKLILAAAFAVLAAGTALAETIKVGVTPGEHAEIMEKVKEVAAPKGLDIEILEFSDYVV
PNQALADGDLNANSFQHQPYLDNQIADRGFDIVSVGLTITTPMGVYSSKVKSLDELEDGA
TIAIPNDPTNGGRALLVLASKGLIKVNPDAGLKVTPADVTENPKNIEFAELDAAQLPRSL
ADVDAAVINTNYALEADLHPKEDAIAIESEKSPYANVIAVRSADKDAPWVKTLVESYHDD
KVKAFIVEHFKGALIPSW