PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03865 SMc03865 amino-acid transport system permease ABC transporter protein (273 amino acids)

SeqID: SMc03865 SMc03865 amino-acid transport system permease ABC transporter protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84028671: Glutamine transport system permease protein glnP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03865 SMc03865 amino-acid transport system permease ABC transporter protein
MTPVQSSDTSGKDDYPWWLIALLVIAAALAAVIAANDIFTQVFTVVLKGLGVTVFVTLVG
FVLATVLGLGVALMALSEHVVLRQIARFYTEVIRGVPILVLLFYIAFVGAPALVTVANFV
AAPLISAGWIEPFVVRDVSLMWRAIMALMIGYSAFIAEVFRAGIQSVDKGQVEAAKALGL
SRYQRFRLVVFPQAIRVILPPLGNDFVAMVKDSSLVSVLGVADITQMGKVYASGSFRFFE
TYSIVAYVYLVLTIGLSLALRAVERRLRRSQVR