PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04045 SMc04045 dihydroxy-acid dehydratase (612 amino acids)

SeqID: SMc04045 SMc04045 dihydroxy-acid dehydratase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04045 SMc04045 dihydroxy-acid dehydratase
MPAYRSRTTTHGRNMAGARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV
AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAMVCIS
NCDKITPGMLMAALRLNIPAVFVSGGPMEAGKVVLHGKTHALDLVDAMVAAADDKVSDED
VQIIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSTLATHADRKRLFVEAGHLIV
DLARRYYEQEDERVLPRNIATKQAFENAMALDIAMGGSTNTVLHILAAAYEGEIDFTMDD
IDRLSRKVPCLSKVAPAKADVHMEDVHRAGGIMSILGELDKGGLINRDCPTVHAETLGDA
IDRWDITRTSSDTVRKFFRAAPGGIPTQVAFSQEARWDELDTDRENGVIRSVEHPFSKDG
GLAVLKGNIALDGCIVKTAGVDESILKFSGPARVFESQDAAVKGILANEIKAGDVVVIRY
EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAANGGTIGL
VREGDMIDIDIPNRTISLRVDEAELAARRTEQDAKGWKPVEQRKRRVTTALKAYAAFATS
ADRGAVRDLGDR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory