PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04085 FitnessBrowser__Smeli:SMc04085 (1595 amino acids)

SeqID: SMc04085 FitnessBrowser__Smeli:SMc04085
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.82
    CytoplasmicMembrane    1.06
    Periplasmic            0.12
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            8.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04085 FitnessBrowser__Smeli:SMc04085
MGVKHNPKRDRHIDAARAAGSRFGAETLPPEILFGGASNDDLDRYTPEMLALTAAHARGE
LARWDGGKPQVSVETVAGVAPGGIEVSIIAITERNMPFLYDSVMGEVTSTHRDIHLAIHP
ILVMEPGKPVKLFDPDEESAPEHRVSHIQIHLSRLTPLEARSLSKRISDVLEQVHQAVHD
WPAMTALLDQAMRELEDYNASRKKSDRDEALAFLRWLRDSNFTFLGMREYTYSGKGGRAT
VERGKGRGLGILSNPDVRVLRQGKDAVLTTPEILAFLEGPDFLIVTKANVKSVVHRRAHM
DYIGIKRFDASGNVVGELRIVGLFTSTAYTRQASEIPLLRHKIEKIVDHFGYDPQSHSGK
TLANTLEAYPRDDLFQIDVGLLAAFCEQINELGDRPRVRVLPRIDHFDRFVSVIVFVPRE
QYDSDVREKIGDYLKTVYDGRVSAYYPAFPEGGLARVHFIIGRSGGKTPRVPQAKLEEAV
RAIVTRWIDRFNLLARKEGTEISVGEAYQAAFTPAEAYADLGDIAACTAGDPIRISFYHR
HQERPDTLELKIFHADTPVSLSRRVPLLENLGFRVISEQTYDIGVHVHGDEPREVVLHDM
ELIHRDGHTLNLARIGPALEEAFLAAWNGTTEDDNFNRLVLLAGLTAREITVLRAYARYL
RQAGITYSQGYIADTLNKYPTIAADIFRLFSTRMDPTTEVKARTKKCSALLTGIEEALSA
VPSLDEDRILRRYVNAVQSTLRTNYFQKDAEGRPRAVLAFKLDPKQLEGLPEPRPFREIF
VYGTEVEGVHLRFGKVARGGLRWSDRAQDYRTEVLGLVKAQQVKNAVIVPVGAKGGFYPK
QLPVGGSRDEIFKAGTEAYKTYIRTLLSVTDNIIGQEVVPPEDTLRLDGDDPYFVVAADK
GTATFSDTANALAQEADFWLDDAFASGGSAGYDHKKMGITGRGAWEAVKRHFREMDVDIQ
TTPFTVAGVGDMSGDVFGNGMLLSEKIRLIAAFDHRDIFIDPEPDIDLSFGERKRMFALP
RSSWQDYDRKALSPGAMIISRSEKLVTLTPEAMAAIGIDKPKATPFEIMSAILKSPVDLL
WFGGIGTYVRGANETDAEVGDRANDAIRVSAEDVRARVIGEGANLGVTQKGRIGFSLNGG
RCNSDAIDNSAGVNSSDVEVNIKIALASAMRDDRLTRPKRNTLLASMTDEVGHLVLRNNY
QQSLAISLTEMQGLANRTPLARLMARLEADGHLNRKVETLPTDQAMSERYQAGRPLTRPE
IGVLLSYAKLVLFDELIVSEIPDDPYFTATLERYFPAKMRKAYAGDIHGHRLRREIIATV
LANETINRGGPAFVSTLTDATGFLSADVVKAAVLALDGFDLPRIYGEIDALDNRISGAIQ
NRLYHEVGRIFALVAERALRTRASEGSVAEAVARLRDGLQKLRGTMRAAISREGAEEARL
RAAGFIENGVSAKLAKEIAELSLMTLVPEIMQIATVTGEPLSRTAQAYFTVTESLRINRL
LAAADRVPATEQFESMALSRAVGDIGTARRDITIAALVEHKGDRNPVLAWQDRDRQRVAT
VGDQLRLLTEKGETTLAKVTVAAGLLSDLARGWTK