PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04127 FitnessBrowser__Smeli:SMc04127 (511 amino acids)

SeqID: SMc04127 FitnessBrowser__Smeli:SMc04127
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6166548: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04127 FitnessBrowser__Smeli:SMc04127
MNNIAIELRGIDKSFGLVHANRNINLRVRKGTIHGIIGENGAGKSTLMSILYGFYQADNG
EILVDGKPVSIRDPNAAISVGIGMVHQHFMLVENFTVLENVMLGAEDSQILNKGIAKARQ
ELKRLEKEYALEVNPDALIEELPVGLQQRVEILKALYRRADILILDEPTGVLTPAEADHL
FRILGQLKAQGKTIILITHKLREIMAITDEVSVMRRGEMVATRTTRETSVEELAELMVGR
RVLLRVEKGESNPGDVKLAVQGLTVKDSRGVTMVDNVSFDVRAGEIVGIAGVAGNGQSEL
LEAIAGIRKAASGTVLLNGRPVDVTGNADAAELRGRGLAHVPEDRHHVGLVLKFEECENA
ILGYHHDPRFANGMFLNIDAIRKDAEEKIAKYDIRPPNARLRTANFSGGNQQKVVLAREM
ERDPDVLIIGQPTRGVDVGAIEFIHKRIIEMRDQGKAVLLVSVELDEIRSLSDRILVMFA
GRVVGERSPEATEGELGLLMAGVEGRKEAAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory