PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04129 FitnessBrowser__Smeli:SMc04129 (433 amino acids)

SeqID: SMc04129 FitnessBrowser__Smeli:SMc04129
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04129 FitnessBrowser__Smeli:SMc04129
MMDNKRRFALVGTGNRGTTMWGRDLLAGWRGLVDLVAIADTNALRAERARTMIATNAPVY
GNVDAMLAETRPDLVIVCTPDDTHDDIVVRALESGADVITEKPMSTTVEKIRRILDAEKR
TGRRVDVSFNYRFAPTAARIKELLNAGEIGRVTSVDFHWYLDTRHGADYFRRWHAYAEHS
GSLFVHKATHHFDLLNWYLDSDPEAVSAFADLQMYGRRGPFRGPRCKLCPHKSECDFYLD
LEADPFLDSLYEEPSEIDSYFRDGCVFREDIDIPDTMVANIRYRNDVHVSYSLNTFQPIE
GHHIAFNGTKGRIELRQYEDQPWETPPEDEILLVRNFPKGKPAMERITVPHFPGGHYGGD
DRLRNTLFEPDAKDPLGQRAGARAGAMSVLCGIAALQSSRTGKIVRLADLMPELFTDGAQ
PMRERLKETCSRR