PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04142 FitnessBrowser__Smeli:SMc04142 (294 amino acids)

SeqID: SMc04142 FitnessBrowser__Smeli:SMc04142
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04142 FitnessBrowser__Smeli:SMc04142
MSFDLTFECLLDSRCDVAESPVFDERRNCLFFVDIGRSALHRVDLSGAGHVEWTIEGGAC
STGLARSGRLVLAQRDRVVLFDPDAGAVTREIAAIEPDIADTRLNDGKVGPDGAFWVGTM
HDVPDRRPVASLYRVSPEGAVERKVEGVVCSNGLAWSGDGSLLFHSDSRGAWIDRWQFDP
ATGALSGRRRLASLDEASGRPDGAATDAEAHYWSAGVSAGIVNRFSPEGRLVGTHRFPVP
APTMPCFAGPDLKTLLVTSLRPAGIGKENRSGGIFVARSPVAGVAVHRFDDRWI