PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04295 FitnessBrowser__Smeli:SMc04295 (298 amino acids)

SeqID: SMc04295 FitnessBrowser__Smeli:SMc04295
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 83305892: Dipeptide transport system permease protein dppC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04295 FitnessBrowser__Smeli:SMc04295
MPTMVAETARSKENRTPGVWTRLLHRPLALIGLAVIIVVVGAAALAPWVVPYDPHEQFFE
GLTIEGAPLPPNSQFWLGTDLVGRDLLSRLIYGARTSLVIGVVANGIAVVIGSLVGIAAG
YFRGWVDTVLMRFTDLMMAFPALLLAIVLAAIFTPSLWIVAMVIAMVNWVQIARVVYTET
RSIAERDFVTAERAMGAGAGRILFRHILPHLLSTIIVWATLGIATTVLLEATLSFLGIGV
QPPIPSWGNIIFENQTYFTSAPWLVFIPGAAILALALAFNLVGDALRDVLDPTQQGRH