PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04455 FitnessBrowser__Smeli:SMc04455 (548 amino acids)

SeqID: SMc04455 FitnessBrowser__Smeli:SMc04455
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04455 FitnessBrowser__Smeli:SMc04455
MKTGGQLVVEALAANGVKRISCVPGESYLAVLDALYDADIEVVVCRQEGGAAMMADAWGR
LTGEPGICMVTRGPGATNASAGLHVARQDSVPMILFIGQVQREAREREAFQEIEYRRAFT
EVAKWVGEIDDPARIPEFVTRAFAVATSGRPGPVVLTLPEDMLTQSTEAPAARAYQPVES
HPGPSQIAKLAELLSTAKRPIAILGGTRWSAESVAGFQSFAERWQLPVGCSFRRQMLFDH
LHPNYAGDVGIGINPSLAGEIREADLVLLVGGRFSEMPSSGYTLIDVPYPRQTLVHVHPD
PGELGRVYRPDLAIAASPRDFVAALSNLTPSAEPHWSARTGEMHAAYLKWSTPPEKGPGD
VQMGPIVNWLEANTGPETIFTNGAGNYATWLHRFHRFRRYGTQAAPASGSMGYGLPAAVA
AKHLHPDREVVCFAGDGCFLMHGQEFATAVRYELPIIVLVVNNGIYGTIRMHQEREYPGR
VSATDLTNPDFAALARAYGGHGETVARTEEFAGAFLRARESGKPAIIEIKLDPEAITPTR
TLSEIRKG