PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_0262 Synpcc7942_0262 diaminopimelate decarboxylase (464 amino acids)

SeqID: Synpcc7942_0262 Synpcc7942_0262 diaminopimelate decarboxylase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600470: diaminopimelate decarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_0262 Synpcc7942_0262 diaminopimelate decarboxylase
MVSTPAAPSLNPQYPALFGTDRPSNSPNQNLFPLTASVTADGQLEVGGCRVSDLVERYGS
PLYILDEQTLRAACQSYRSALAHHYPGAALPIYASKAWNCLAVCALVAQEGLGIDVVSAG
ELYTALQAGVPSDRLYFHGNNKSLSELAMGVEAGCTIVVDNWQELRNLEAIAAEQQREVR
VMIRFTPGIECHTHEYIRTGHLDSKFGFDPDQLDALLAALVDQPYLRCIGLHAHIGSQIF
ELQPHADLAGVLVGAYAKALALGLPIAELNVGGGLGIRYTESDDPPSIDEWVRQVSESLV
AACQAADLPLPKLICEPGRSLIGTACVTAYQIGSRKEVPGIRTYLAVDGGMSDNPRPITY
QSTYRAVIANRLNVSDRETVTVAGKHCESGDVLLKDAELAPSQPGDILVVLATGAYNYSM
ASNYNRIARPAAVLVNNGEAQIILARESLQDLLRQDRLPVGLQA