PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_1440 FitnessBrowser__SynE:Synpcc7942_1440 (306 amino acids)

SeqID: Synpcc7942_1440 FitnessBrowser__SynE:Synpcc7942_1440
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_1440 FitnessBrowser__SynE:Synpcc7942_1440
MRVRVAVPATTANLGPGFDCLGAALTLYNHFWFAPASTGELEITARGMDAEKISGDRDNL
VYRAFAAFFEKQEQPVPALKLEIELAVPLARGLGSSATAIVAGLVGANALAGSPWSNAQL
CDLATELEGHPDNVVPALLGGCRLAARDRQNQWAIADLDWHPDFIPVVAIPDFELSTEAA
RQVLPTQYSRSDAIFNAAHVGLVVRSLASGNGEWLAAALQDRLHQPYRQALIPGYAAVET
AALEAGAFGLVISGAGPTLLAISSPDRAEAVRQAMLTTWQATGLSVRAEILAIAESGTQI
EQETEN