PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_1501 Synpcc7942_1501 D-3-phosphoglycerate dehydrogenase (546 amino acids)

SeqID: Synpcc7942_1501 Synpcc7942_1501 D-3-phosphoglycerate dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_1501 Synpcc7942_1501 D-3-phosphoglycerate dehydrogenase
MIGRICGSSIPVARWLTMPKVLVSDPIDQVGLDILSQVAQVDVKTGLSPSELAQIIGEYD
ALMLRSGTRVTAEVIEAGQKLRIIGRAGVGVDNVDVPAATRRGIVVVNSPEGNTIAAAEH
TLAMMLSLSRHIPDANASTKSGGWDRKSFVGTEVYKKTLGVVGLGKIGSHVATVAKAMGM
KLLAYDPFISAERAEQIGARLVELDILFQEADYITLHIPKTPETANLINAETLAKMKPTT
RIINCARGGVINEQALADAIAAGKIGGAALDVYDQEPLQADSPLRALGKNLILTPHLGAS
TTEAQVNVAVDVAEQIRDVLLGLPARSAVNIPGLYPDILEKLRPYLQLAETLGNLLSQVA
GGRLEQLTVRLQGELAAQQSQPIVVAALKGLLTQALRERVNYVNAMIEAKERGIRIIETR
DESVRDDYAGGSLQLVATGSNGEHRVMGALLGDGEIRITNVDEFPVNVPPSRYMLFTRHR
DMPGIIGKIGSLLGSFNVNIASMQVGRRIVRGDAVMVLSLDDPLPEGILAEITKVAGISD
AYTVVL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory