PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Synpcc7942_1714 FitnessBrowser__SynE:Synpcc7942_1714 (338 amino acids)

SeqID: Synpcc7942_1714 FitnessBrowser__SynE:Synpcc7942_1714
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1170927: Homoserine O-acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Synpcc7942_1714 FitnessBrowser__SynE:Synpcc7942_1714
MTVGTFRLPNFELDCGAVLPEASLVYATYGELNRDRSNAILYPTSYGAQHSTIDWLIGGD
RILDPDRWFIVIVNQFGNGLSSSPSNDPACGLAEQGFWFSHWDSVCAQQALLSQVLGIEQ
LALIYGWSMGAQQAYHWAIAFPDRVQRIAALCGTAKTTEHNRLFLESLRAALIADPTWDG
QRFQATPDRGYKAFARIYASWAASQAFYRAGIYRQQGYSSLEDYLERGWEANYRQRDPHD
LLAMIDTWLRCDVSDRPAFGGDLAKALGSITAQTLVMPSTTDLYFTPEDCEAEAQLIPKA
HYCPIPSIWGHRAGNPSQNPQDESFIRQAVQALLNAEA