PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_003211097.1 NCBI__GCF_000691145.1:WP_003211097.1 (470 amino acids)

SeqID: WP_003211097.1 NCBI__GCF_000691145.1:WP_003211097.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118672: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_003211097.1 NCBI__GCF_000691145.1:WP_003211097.1
MVVGDFPIETDTLVIGAGPGGYVAAIRAAQLGQKVTIVEKGTLGGVCLNVGCIPSKALIN
AGHRFENAKHSEDMGIKAENVTVDFTKVQEWKASVVNKLTGGVQGLLKGNKVDIVKGEAY
FVDSNSVRVMDENSAQTYTFKNAILATGSRPIELPTFKYTDRVINSTGALALKEVPKKLV
VIGGGYIGTELGTAYANFGTEVVILEGGDEILPGFEKQMSSLVKRNLKKKGNVEIHTNAL
AKGVEEKSDGVTVTFEVKGEEKTVDADYVLVTVGRRPNTDELGLEQVGVELTDRGVVKTD
KQCRTSVSNIYAIGDIVDGPPLAHKASYEGKIAAEAIAGEPAEIDYLGIPAVVFSEPELA
TVGYTEAEAKEEGIDIVAAKFPFAANGRALSLDATDGFMKMITRKEDGLVIGAQIAGVGA
SDMISELSLAIEAGVTAEDIAMTIHAHPTLGEITMETAEVAIGSPIHIVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory