PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_004110580.1 NCBI__GCF_000359745.1:WP_004110580.1 (328 amino acids)

SeqID: WP_004110580.1 NCBI__GCF_000359745.1:WP_004110580.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597142: binding protein component precursor of ABC ribose transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    OuterMembrane          0.00
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_004110580.1 NCBI__GCF_000359745.1:WP_004110580.1
MSNSTKHESVLFNAPRRSALKLGLAGTLVLALSCGVSPAFAAGKPKVGLIMKSLSNEFFK
QMKAGADKYAAENKDKFDFKAVGMKDERDFAAQVDAVENFVTQKYDIIVVAPADSKAMAT
PLAKAVKAGVKVINIDVPLDADAKKAAGIDLAFFGPDNKEGAKLAGDALAKDLGPGAKVV
ILEGNPEADNAKERKEGFVDSIKGGKLELLDSKTAHWETEEANTVMTNFLTKYKNIQGVM
AANDSMALGVVKALDASGQSGKIKVVGFDNIPPVKPLIKDGKMLATVEQYGAEMAVMGIK
YGLRELGGEKFSGWVKTDIKLVTTKDVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory