PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_004124104.1 NCBI__GCF_000359745.1:WP_004124104.1 (492 amino acids)

SeqID: WP_004124104.1 NCBI__GCF_000359745.1:WP_004124104.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 132119: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Extracellular          0.00
    Periplasmic            0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_004124104.1 NCBI__GCF_000359745.1:WP_004124104.1
MEFLLEVEGLKKSFGGVAALRDGCFQLRPGSVHALCGGNGAGKSTFLKILMGIHKRDAGS
IRRRGKDVDYASPAAALAAGIAIIEQELSPIPHMTVAENIYLGREPSARFGGIDFKTMNR
NAQALLDRLRFNIRATQFMMNLSVAQIQLVEIAKALSHDAEVIFMDEPTSAIGEKEAQQL
FSTIERLKAEGKGVVYVSHRLSEIFQIADSYTAFRDGSYVGSGALADIDRPGLIRMIVGR
ELGEEYIKTNVPTATPGLEVAGLTAEGKLNDISFTAHKGEIFGIYGLMGSGRTEIFNCIF
GLDVLNSGQIKLAGQPITVGKPAEAMQHGIAFVTEDRKLTGLNLIDSVRNNICLASLPEM
SPRFSMDSRAEASASQDMIERFGIKAARDSMPVSGLSGGNQQKVVLGKWFLRKPKVLLLD
EPTRGVDVGAKREIYRIICDFAAEGGTVIMISSEIDEVLGMSDRILVMRQGRSAGILKRE
EADAQSLVHLST

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory