PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_005344073.1 NCBI__GCF_000173975.1:WP_005344073.1 (597 amino acids)

SeqID: WP_005344073.1 NCBI__GCF_000173975.1:WP_005344073.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 24212404: Aspartyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    Periplasmic            0.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_005344073.1 NCBI__GCF_000173975.1:WP_005344073.1
MAESMKGLKRSHRCTEVSNENIGETVTLMGWVQKRRNLGSLIFVDLRDRSGLIQLYFDEE
TIGEEGFKKAASLRAEFVIAVTGTVEKRSGAVNENLETGDIEVKVDSIRILSESETPPFP
IDADITVKDELRLKYRFLDLRRPNIQKNLMMRSKVATLTRQFLANEGFLEIETPMLTRST
PEGARDYLVPSRVHPGSFYALPQSPQLFKQLLMCSGYDRYFQLARCFRDEDLRADRQPEF
TQIDMELSFVDVDDVIDVNERLLAYLFKLCLNEEVSLPIQRMTWQDAMDYYGSDKPDLRF
DMKIQDVSELVKDCGFGVFTGAIENGGMVRGLCAKGLGDVSSKKMKHIEKTAKDYGAKGL
AYIQLKSDGTVKCPFSKFMSEEELQALIQAMGGETGDLLVFAADKFKVVCDVLGALRLKF
AEELNLLDKSEYRFVWITEFPLLEWSEEENRYTAMHHPFTMPMEEDLDMIDTEPGKVRAK
AYDIVLNGTEIGGGSVRIHQNDIQEKMFECLGISKEQAQEKFGFLLEAFKYGVPPHAGLA
YGLDRLVMLMTKEDTIRDVIAFPKVKDASCLLTDAPNTVDDKQLEELCLEIEIPEKE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory