PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_007154429.1 NCBI__GCF_000170835.1:WP_007154429.1 (726 amino acids)

SeqID: WP_007154429.1 NCBI__GCF_000170835.1:WP_007154429.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [19 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_007154429.1 NCBI__GCF_000170835.1:WP_007154429.1
MTDKQHPEEHPVNDIGDDHVLAHDVDEEPVEANRRLFKGGMLKFVTLLAIAYSSFHLYSL
NIAPLETWSFRIVHIAGALVLGFILFAGARFVSAEEGPARHRWTTWIGALAMVPAVYALY
QTFSFHQMILGGTLRIPVDLETWHFGWPLLAASAIGIVMSWFHQRERSRFSVPDLVLIVC
SVAVAAYFLVVYNTSMRMSTGTSFAPVGISFAAIAGTALIMELTRRVAGLALVVIGLVFL
VYVFLGPYLPGFLGYPGLSVQRFFSQVYTDAGILGPTTAVSSTYIILFIVFAAFLQASKV
GDYFVNFAFAAAGRTRGGPAKVSIFASGLMGMINGTSAGNVVSTGSLTIPLMKKVGYSKQ
SAGAVEAAASTGGQIMPPIMGAGAFIMAEITGIPYTEIAIAAIIPAILYFASVYFMVDFE
AAKTGMRGMREDELPKLKTMVKQCYLFVPIIILIVALFMGYSVIRAGTLATVSAAVVSWF
SPNKMGIRKILEALEIASYMAIQIIVVCAAAGVIVGVISLTGVGARFSVLLLDVAEASQL
LALIFAMFISILLGMGMPTTAAYAVAASVVAPGLVQLGIEPLTAHFFVFYFAVVSAITPP
VALASYAAAGISGANAMETSVASFRIGIAAFIVPFMFFYNGALLMDAGWFDIARALITAL
FGVYMLSGGVLGWFARASAGVITRLLLIGAALLMIEGGLWTDLSGIALAVIAFLAQRQSK
LRPAST