Running PSORTb v3.0 on WP_007694352.1 NCBI__GCF_000336675.1:WP_007694352.1 (507 amino acids)
SeqID: WP_007694352.1 NCBI__GCF_000336675.1:WP_007694352.1 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Extracellular [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Extracellular 9.64 OuterMembrane 0.23 Periplasmic 0.11 Cytoplasmic 0.01 CytoplasmicMembrane 0.01 Final Prediction: Extracellular 9.64 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>WP_007694352.1 NCBI__GCF_000336675.1:WP_007694352.1 MSDTDERAFYRFTVSERIEARWEADLTEADYPDGVDGRTASGAVAERGADNFHFAGDVVT FALDGPATVYMNGDEIDTEERWNSELPNTLLLESEDTERATYEFDVSGDLEAGVLADLTN AEVPDSVEGSHASGAVAGGGTDDFRFSGRVTRFSSDGPLRVFRNGSEVDPDSFGSSGPVP VTVDTVATNLEIPWGAAFRGDTLYFTERPGRIMKVESGSGELVADFTDPTRANGYGEGGL LGLAFHPDDPDTAYAYQTYVDGDEAANRILELDAASGFSSSVLFDGIEGADGHDGGRLAI DGDALYATVGDTKEPQSAQDPSSLSGVVIRLTLDGEPHPDNPFDGDEGHPAVYTYGHRNP QGLAFRDGEVYSTEHGPDHDDEINVLEAGSNYGWPRASGTESEGEFVGAIAAYTPTIAPG SATFYDGPISQWQGDLFFGTLSGEHLHRVRLDGHDAVEEERLYEGEYGRIRTAFTGPDDH LYLATSNRDGRGSPVASDDRILRIRPD
Lawrence Berkeley National Laboratory