PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_007703655.1 NCBI__GCF_001277175.1:WP_007703655.1 (609 amino acids)

SeqID: WP_007703655.1 NCBI__GCF_001277175.1:WP_007703655.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_007703655.1 NCBI__GCF_001277175.1:WP_007703655.1
MCGIVGAVAQRDIAEILLEGLRRLEYRGYDSAGLAVVDNAGHMTRLRRLGKVQMLVQAAE
EHPLHGGTGIAHTRWATHGEPSEGNAHPHVSGHIVVVHNGIIENHEPLRELLKTRGYEFV
TETDTEVIAHLVHWELEQGGTLREAVLRAIPQLRGAYGTVIMDNRDPSVLLAARSGSPLV
IGLGVGENFIASDQLALLPVTRRFIFLEEGDIAEVTRRSVAIFNTQGESVSRPEIESNVQ
YDAGDKGIYRHYMQKEIYEQPNAIKNTLAGRISHGEVDLSELGPNADELLSQVEHIQIVA
CGTSYNSGMVSRYWFEALAGVPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAAL
RLSKELGYLGSLAICNVPGSSLVRESSLALMTKAGTEIGVASTKAFTTQLTVLLMLVAKL
SRLKGADAAIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIA
LEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRAR
GGVLYVFADQDAGFSSSDNMNIIPMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPR
NLAKSVTVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory