PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_008197813.1 NCBI__GCF_000166275.1:WP_008197813.1 (800 amino acids)

SeqID: WP_008197813.1 NCBI__GCF_000166275.1:WP_008197813.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598210: fatty-acid oxidation complex alpha-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_008197813.1 NCBI__GCF_000166275.1:WP_008197813.1
MKRTIKNVAILGSGVMGSRIACHFANIGVQVLLLDIVPFELTEQEQKKGLTKEDPAVRNR
LVNSALQSTLKSNPSAIYDKAFADRIQTGNFDDDLHKIKDYDWVMEVVVERLDIKQSLFE
KVEKHRKPGTLITSNTSGIPMHMMCEGRSEDFQENFAGTHFFNPPRYLRLLEIIPGPKSK
PENIEFLMDYGDRFLGKETVLCKDTPAFIANRVGVYAIISAMHTVEKMGLGVSEVDKMTG
TVIGRAKSATFRTMDVVGLDTTVNVANNLYKALPNDESREKFKLPKIVEVLYENKWFGDK
TGHGYFKMIRHKDGSKELKEIDFETFEYKDVEKPNIKALQASKEIEDLKKRIKFLVNFDD
KAGEFYRTTFYDLFKYCSNRIPEISDELYRIDQAVCAGFGWELGPFETWDVLGVKETVEK
MEAAGEKPAAWVYEMLEAGNDSFYQVIEGKKHYYDIPTKSYKEIPGIEEFIILDTLKSAG
KKLWENPGASVYDMGDDVIGLEFHTKMNSMGQEVIEGINTAIGMAEKSHKGLVIGNEGAN
FSAGANLAMLFMFAGDQDFDEINLMIAQFQNTMMRARFSSIPVVLAPHNMALGGGCELSL
HSDHIQAHAELYMGLVEVGVGLIPAGGGTKEMTLRFSNEIESGDVELNRLQERFMNIAMA
KVSTSAEEARNLGYLRNSDGITLNRKRQLAEAKQKVISLYDQGYSQPVEQNIKVMGKSSL
ALFEAGITGMQYGAYISEHDAKIARKLAWVMSGGDLSSPTEVSERHLLDLEREAFLSLTG
EKKTLERIHSILFKGKPLRN