PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_008201258.1 NCBI__GCF_000166275.1:WP_008201258.1 (1125 amino acids)

SeqID: WP_008201258.1 NCBI__GCF_000166275.1:WP_008201258.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1723836: LAO/AO transport system kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Extracellular          0.00
    Periplasmic            0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_008201258.1 NCBI__GCF_000166275.1:WP_008201258.1
MTQIKETYKPKNHIRIVTAASLFDGHDAAINIMRRIIQSTGCEVIHLGHNRSVQEIVDCA
IQEDVQAIAITSYQGGHVEFFKYMYDLLHEKGAGHIKIFGGGGGTILTEEIKELHDYGIS
RIYSPDDGRSMGLQGMINDLVSQADYSIGDEFQEGFTLNKENKGFIARAISAFENYPDQS
TDLLNEVREKSKKSTIPVLGITGTGGAGKSSLVDELVRRFLIDFEDKSLAIISVDPSKRK
TGGALLGDRIRMNSIHHPRVFMRSLATRQSNLALSKYVQDAVDTVKAAGFDMVILETSGI
GQSDTEIIEHSDLSLYVMTPEYGAASQLEKIDMLDFADVIALNKFDKRGAQDALRDVKKQ
FKRNHLLWETPDEEIPVYGTIASQFNDPGMNHLYRALISKVGETHEEWKSSFELTGGTSE
KIYIIPPSRTRYLSEIAETNRNYDVWVEEQKDIAQKLYSIKKSMEAVQSLEVNDQDRLLK
ELAGVYEQVELELDPKNKKWIEEWPEEVARYSEDFYVFKVRDKEIKVKTYHNSLSETKIP
KIALPKYEAWGDLLKWGLRENVPGKFPYTAGVFPFKREGEDPTRMFAGEGSPERTNKRFH
YVSQDMPAKRLSTAFDSVTLYGEDPDYRPDIYGKIGNSGVNVCCLDDAKKLYSGFNLVDP
LTSVSMTINGPAATMTAFFMNAAIDQQCEVYIKEQGLEKEVDAKIERIFKGKGIPRPVYN
GKIPAGNDGLGLMLLGVSGDQVLPKEVYEKIKAETVSRVRGTVQADILKEDQAQNTCIFS
TEFSLRLMGDVQDYFIDHGIRNFYSVSISGYHIAEAGANPITQLALTLSNGFTYVEYYVS
RGMDINKFAPNLSFFFSNGIDPEYAVIGRVARRIWAKAMKLKYGANERSQMLKYHIQTSG
RSLHAQEIDFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEASVRRAMAIQLIINKE
LGLSKNENPLQGAFIIEELTDLVEEAIYLEFDRITERGGVLGAMETMYQRGKIQEESMHY
EMLKHTGEYPIIGVNTFLSSEGSPTVTPGEVIRATEEEKESQIQTLKNLNQFDPELVSTH
LQNLKKIAVENGNIFSELMEASKHCSLGEITHALYEVGGQYRRNM