PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_008507649.1 NCBI__GCF_000182725.1:WP_008507649.1 (756 amino acids)

SeqID: WP_008507649.1 NCBI__GCF_000182725.1:WP_008507649.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2507168: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_008507649.1 NCBI__GCF_000182725.1:WP_008507649.1
MRELTTGPRVLLKRLRELMAEPLEPQARLDRIVREIAQNMVAEVCSFYILRADGVLELYA
TEGLNPQAVHLAQLRLGQGLVGTIAASARPLNLTDAQSHPAFAYLPETGEEAYNSFLGVP
VLRAGRTLGVLVVQNRTKRAYREDEVEALETTAMVLAEIIATGDGLRLARPGIELDLGRP
MNVTGHGFNDGIGLGHVVLHEPRIVVTNLFNEDSQAELNRLDEALGSLRISIDDMLSRRD
VAVEGEHREVLEAYRMFAHDRGWVRRLEEAVHNGLTAEAAVEKVQSDTRARMVHLTDPYM
RERLSDFDDLANRLLRQLMGRDVKTIAESLAKDAIIVARSMGAAELLDYPRERLRGVVLE
DGAATSHVVIVARAMGIPVVGQAKGVVSMAENNDAIIVDGDEGIVHLRPQADVESAYAEK
VRFRARRQAHYRELRDKPAITKDGVDIALLMNAGLLVDLPQLSASGAAGIGLFRTELQFM
VASTFPRSEQQERLYRSVIDAAGDKPVTFRTLDIGGDKVLPYFRATAQEENPALGWRAIR
LTLDRPGLLRTQLRALLKAAGGRELKLMLPMVTEVSEVKAAREIIEREVRHLSRFAHSLP
LCLKLGAMVEVPALLWQLDELMTAVDFVSVGSNDLFQFLMAADRGNSLISDRFDQLSPSF
LRALRHIVKAGARHDKPVTLCGEMAGRPLTAMTLIGLGFRSISMSAAAIGPVKAMLGALD
AGKLNALLLEELNKPNNAHSLRELLLRFAEDNEIPL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory