PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_008510473.1 NCBI__GCF_000182725.1:WP_008510473.1 (477 amino acids)

SeqID: WP_008510473.1 NCBI__GCF_000182725.1:WP_008510473.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2500890: Amino acid carrier protein alsT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_008510473.1 NCBI__GCF_000182725.1:WP_008510473.1
MATIIDFLNNVFWNYILVYGLLAVGFFFTIRLKFVQFVHFPELFRVVFAAGRRDEAGISP
FQALTISIASRVGTGNITGVAVALYLGGPGAIFWMWIVALVGLATAYSESALAQLYKIRN
QDGQYRGGPAFYIARGLGLPWAGALFSVCLILSFGLVFNAVQANAIADSMVMAFNMPKLG
TGIVLAILSGVVIFGGIRQIARVAEVVVPFMAFAYILMAICILAINFQAVPSTIALIFSS
AFGLHEAVGGVTGGITAAMLNGVKRGLFSNEAGMGSAPNIAAVATPAPHHPSSQGFVQSL
GVFIDTILVCTATAIMILLSGILEPGSGLTGTQLTQMAMTHHIGDVGVYFIAAAIFFFAF
TSIIGNYSYAESAMTFLGLGGKVPITILRCALLAMVVWGAYESIHTVFDAADASMGLMAT
INLIAIVLLSGTVKKLTVDYFAQRRAGQVPTFHAADYPELQGQIDMEIWSEQDTTKK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory