PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_008804223.1 NCBI__GCF_000025465.1:WP_008804223.1 (403 amino acids)

SeqID: WP_008804223.1 NCBI__GCF_000025465.1:WP_008804223.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00594: AROMATIC_AA_PERMEASE_1 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506096: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_008804223.1 NCBI__GCF_000025465.1:WP_008804223.1
MKNRTLGSILIVAGTTIGAGMLAMPLAAAGVGFTVTLGLLFTLWALMCYTALLLLEVYQH
VPADMGLGSLAARYLGRYGQWVTGFCMLFLLYALTAAYISGAGELLASSLNQWLDWQLPP
AAGVLLFTALGGAVVCIGTSLVDLFNRFLFSAKIIFLVIMLALLMPHIHQVNLLTLPVEQ
GLALSAIPVIFTSFGFHGSVPSIVSYLGGDIRKLRRVFIIGSFIPLVAYIFWQLATLGSI
NPPAFTALLAKNAGLNGLLEAIREVVASPHVELAVHLFADLALATSFLGVSLGLFDYLAD
VFQRKNSVSGRLQSGAITFLPPVAFALFYPRGFVMALGYAGVALAVLALMLPALLAMKSR
RQHPQAAWRVVGGAPALWLVLLCGIGIVAIQFSIVAGLLPAVG