PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_009122666.1 NCBI__GCF_900129655.1:WP_009122666.1 (803 amino acids)

SeqID: WP_009122666.1 NCBI__GCF_900129655.1:WP_009122666.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 728965: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_009122666.1 NCBI__GCF_900129655.1:WP_009122666.1
MKHKLIIGISVLCLGLVGNVQAQNKKMYRKGWIDFNKNGVKDIYEDPSQPVEKRVADLLS
QMSVEEKTCQLATLYGYGRVLKDSLPVAGWKNEIWKDGIANIDEMLNGVGKKSALVPDLL
YPFSNHAEAVNTVQRWFVEETRLGIPVDFTNEGIHGLNHTKATPLPAPIAIGSTWNKELV
RRAGVIAGQEAKALGYTNVYAPILDVVRDPRWGRTLECYGEEPFLIAALGTEMVNGIQSQ
GVAATLKHYAVYSVPKGGRDGHCRTDPHVAPRELHELFLYPFKKVIQNSHPMGVMSSYND
WDGVPVSASYYFLTELLREEYGFDGYVVSDSQAVEFVESKHHVADTYDEAVRQVLEAGLN
VRTHFTPPSDFILPIRRLLEEKKISMATIDKRVSEVLRVKFRLGLFDRPYVTDTGAADNV
GGADRNMDFVKEMQQQALVLLKNENNILPLDKQRIKKVLVTGPLADEDNFMTSRYGPNGL
ETVTVLAGLRAYLQGVAEVDYAKGCDIVDAGWPATEILPVPMNEREKRGIAEAVAKAGES
DVVIAVLGEDEYRTGESRSRTSLDLPGRQQQLLEALHATGKPVILVLINGQPLTVNWANA
YIPAILESWFPGCQGGTVIAETLFGEHNPGGKLTVTFPKSVGQIELNFPFKPGSHGSQPK
SGPNGSGATRVIGELYPFGFGLSYTTFAYSDLEVSPLRQRTQGEYTVKVNVTNTGKRAGD
EVVQLYVRDKVSSVITYDSQLRGFERVSLKPGETRQVTFSLKPEDLQILDRNMNWTVEPG
EFEVMIGASSQDIRLKKTITALP