PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_009130708.1 NCBI__GCF_000315485.1:WP_009130708.1 (747 amino acids)

SeqID: WP_009130708.1 NCBI__GCF_000315485.1:WP_009130708.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_009130708.1 NCBI__GCF_000315485.1:WP_009130708.1
MVYDVTMLRAFYAAYKGKMERVRAVLQHPLTLAEKILYTHLFDGKEVKNYTRGEDYVSFR
PDRVAMQDATAQMALLQFMNAGREQVAVPSTVHCDHLIQAYRGAREDIATATKTNEEVYD
FLRDVSSRYGIGFWQPGAGIIHQVVLENYAFPGGMMVGTDSHTPNAGGLGMVAIGVGGAD
AVDVMTGMEWELKMPRLIGVHLKGELNGWAAPKDVILKLAGILTVKGGTNAIIEYFGPGT
ASLSATGKATICNMGAEVGATTSIFPYDNRIATYLKATGREEVAEMADSVAGDLRADTDI
LLAPENYYDRVIEIDLSRLEPYINGPFTPDAATPISEFAEKVLANGYPRKMEVGLIGSCT
NSSYQDLSRAVSLARQVEKKHLKVAAPLIVNPGSERIRATAERDGMIETFEKVGATIMAN
ACGPCIGQWKRETDNPTRKNSIVTSFNRNFAKRADGNPNTYAFVASPELTMALTIAGDLC
FNPLTDALVNREGEKVKLSEPVGEELPPEGFAEGSEGYIPPRSEKTEITVNPHSQRLQLL
QPFPAWEGTDLLNMPLLIKTQGKCTTDHISMAGPWLRFRGHLENISDNMLMGAVNAFNGE
TNSVWNRSTNTYGPVSGTAKMYKSEGISSIVVAEENYGEGSSREHAAMEPRFLNVRVILA
KSFARIHETNLKKQGMLALTFVDKADYDKIQEHDLISVIGLTEFAPGRNFKVVLHHEDGT
KESFEAQHTYNELQISWFRAGSALNAR