PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_010442419.1 NCBI__GCF_000192475.1:WP_010442419.1 (799 amino acids)

SeqID: WP_010442419.1 NCBI__GCF_000192475.1:WP_010442419.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2498933: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_010442419.1 NCBI__GCF_000192475.1:WP_010442419.1
MNVKPVFEVPYERSGVLAPGLPILPHGTERHPVPGTGSRAVPVSKGDTITLLDRDGMQPA
EMVFFAPDRSSDAAMLGAQGHGRPEGLIATLANGSASGKKVLRALEVAGFDIGRGDAVRA
FSDGSRPGDMVHFVAESDGLLIVAAPGEAMRPEDNNPPTDIILYIQRAAPGLEKPDVGPP
DPLADPLKDINIQPGNAKSYEVKAGEFIQIVDIRGRECSDFQAFSRRALDQGIEREIDPT
TTRSLMGSLYPQPGIFSKYWSVDQEPLVEIVQDTCGRHDTFGLACTARYYEDLGYPGHVN
CSDNINKDLSQYGIRPRAGWSAINFFFNTMLDDSNAIGMDDPWSRPGDFVLLRALTDLVC
VSTGCPCDIDPANGWNPTDIQVRTYKATEDFKRSYGYRKSAEADVEETKKTAFHDCFARH
TRDFVEYNGYWLPNTMTNHGAIAEYWACRDKVAVMDLSPLRKYEVVGPDAEELMQLCVTR
NMKKLSVGQVVYTAMCYEHGGMIDDGTIYRLGETNFRWIGGNDTSGLWLQEQARKHNMNV
WVRNSTDQLHNIAVQGRYSRDILSQIFWTPPQQPTIEELPWFRLTVARVGDVRGTSVVIS
RTGYSGELGYEIFCHPKDAVEIFDRVWEVGQDYGIAPLGLAALDMLRIEGGLIFAGSEFD
DQTDPFEAGVGFTVPLKSKTDNFIGRSAIEERKAHPHRKLVGFDIEGGTVPSPGDCVRIG
KAQVGEITSAMKSPILGKVIALGRVASTHALEGHDIEIGQLDGQQKRLKAKIVPFPHFDP
AKERVKGVYLRNDFPDAAE