PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_010529741.1 NCBI__GCF_000224785.1:WP_010529741.1 (496 amino acids)

SeqID: WP_010529741.1 NCBI__GCF_000224785.1:WP_010529741.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1709485: Glycine betaine transporter opuD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_010529741.1 NCBI__GCF_000224785.1:WP_010529741.1
MKNVSRVFYITVALVIITVIFGAIFPTQFEAITGSIKSYVATTFGWYYMLLMSALVIVAI
FIAVSPMGKIRLGKDNDRPDFSTATWVAMLFSAGMGIGLVFYGAAEPLFHYMSDAPTAEE
GSGQAFKEGLSYAYFHWGLHVWAMYGVTALALAFFQFRKDEPGLISSTLKPLFGKKMDGP
LGTLIDVLAVFATVFGVATSLGFGAVQINGGLSHLFNFEVGFTSQFIIITVVTLLFLISA
WSGLSKGIKYLSNTNMVLSIILLIAVLVVGPTLLILNMFTETFGMYMQNIIQTSFRTSPL
ESDNRGWLDAWTIFYWAWWISWAPFVGMFIARVSRGRTIRQFMTGVLILPTLLVSIWYAT
FGTTAGNVQNSGVELTQYTTELVLFNMFDQLPLSLVLSVIAILLIGSFFITSADSATFVL
GMQSTHGSLEPANKIKIAWGIAQSSVALILLYVGGLQAIQNTIIVAALPFSFVMILMIIA
LFKALNKEVQAIKGRG