PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_010538804.1 NCBI__GCF_000226135.1:WP_010538804.1 (581 amino acids)

SeqID: WP_010538804.1 NCBI__GCF_000226135.1:WP_010538804.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_010538804.1 NCBI__GCF_000226135.1:WP_010538804.1
MENQELIKQVTEKAEKWLTPAYDAETQAEVKRMLENEDKTELIEAFYKDLEFGTGGLRGI
MGVGSNRMNIYTVGAATQGLSNYLKKNFKDLPQISVVVGHDCRNNSRLFAETSANIFSAN
GIKVYLFDDMRPTPEMSFAIRHLGCQSGIILTASHNPKEYNGYKAYWDDGAQVLAPHDAG
IIDEVNNIASAADIKFQGNPDLIQIIGEDIDKIYLDMVKTVSIDPEAIARHKDMKIVYTP
IHGTGMMLIPRALKMWGFENVFTVPEQMIKDGNFPTVVSPNPENAEALSMAVNLAKEIDA
ELVMASDPDADRVGIACKDDKGEWVLINGNQTCMMYLYYILTQYKQLGKIQGNEFCVKTI
VTTELIKKIADKNNIEMLDCYTGFKWIAREIRLREGKKKYIGGGEESYGFLAEDFVRDKD
AVSACCLIAEVAAWAKDNGKSLYQLLLDIYVEYGFSKEFTVNVVKPGKSGAEEIKAMMEN
FRANPPKELGGSKVILSKDYKTLKQTDAEGKVTALDMPETSNVLQYFTEDGSKVSVRPSG
TEPKIKFYMEVQGEMGCRNCFASADAAAMEKIEAVKKSLGI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory