PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_010554785.1 NCBI__GCF_000238395.3:WP_010554785.1 (914 amino acids)

SeqID: WP_010554785.1 NCBI__GCF_000238395.3:WP_010554785.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_010554785.1 NCBI__GCF_000238395.3:WP_010554785.1
MNNSFDTQHQLTINGEQYHIHSLKGLGDKAKRLPFSLKVLLENLLRNEDGANIKEQDIQA
LLNWDPQAKPASEVAFTPARVVMQDFTGVPAIVDLAAMRDAMEKLGGDPAKINPLSPAEL
VIDHSVQVDGYGNDGAFDLNAKLEYDRNKERYEFLRWGQTAFDNLKVVPPATGIVHQVNL
EYLARVVFNEERDGKKFAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPISLL
IPQVVGMKLSGRLPEGTTATDLVLTVTEILRNHGVVGKFVEFYGDGLADLPLADRATIAN
MAPEYGATCGIFPIDDETINYLRLTNRDESHLKVIEDYAKHQGLWRNDGDEASYTDTLEL
KLGDVVPSLAGPKRPQDRISLDKAGEVISQHLKNFQDERMARRDNSDEEQARIESEGPTT
NPDEPVNEAQFMGAAKVKFKGQEFELNDGACVIAAITSCTNTSNPSVILAAGLVAKKAKQ
LGINVKPWVKTSLAPGSKVVTDYLEKAGLMDDLESLGFNLVGYGCTTCIGNSGPLATEIS
DAIQKHKLVVSSILSGNRNFEGRIHQDVKMNFLASPPLVVAYAIAGRTDIDVYNEPLAQD
ANGNDIYLKNIWPSVKEVSDLVKETVTKEMFEKSYANVYEGDSRWQQIKIPDGKLYDWDD
ASTYIKKAPFFDGMKVEPPGIPTIEGARCLAKLGDSVTTDHISPAGAIKADAPAGLYLQE
NGVDKAQFNSYGSRRGNHEVMMRGTFANVRLKNLLAPGTEGGVTRTQPGDTLESIYDAAM
EYQKNNTPLIILAGKEYGTGSSRDWAAKGSLLLGVKAVVAQSYERIHRSNLIGMGVLPLQ
FKEGESYESHGLTGQEQFDIDGLYDKTDEVTVIATNAEGKKVTLSADVRIDTPKEWDYYK
HGGILQYVLRNMLD