PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_010932619.1 NCBI__GCF_000006985.1:WP_010932619.1 (369 amino acids)

SeqID: WP_010932619.1 NCBI__GCF_000006985.1:WP_010932619.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598361: histidinol-phosphate aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_010932619.1 NCBI__GCF_000006985.1:WP_010932619.1
MNHDHLLAHRHGDRSGDRLASAISLDFSVNLAPIEPPLQELFSTSIPLAPYPSMDGHGVR
EFYAARFGLDPVCVLSTNGAIEGLYLIPRALGIKRVLVPQPSFFDYGRACRLAGAEVVPL
ALSESGSFAFPGIDKLADALAGCDALLAGSPNNPTGTLIPKELLLALACRFPEKRFIVDE
AFIQFTEAFPSNSLMTEIKAFRNIAVVHSLTKFYAIAGLRLGAVIAHPSMIRQLYGYKEP
WTVNAVAEHVAGQLLHCGEYEREVHAIVREGRKQIADGLAGNSVITLHGGAANFFFASVA
DEFSLDALFDVLAERGILVRDCRNFEGVPPKYFRFCIRTSDENRRLIEALNDFAELSRIA
KAAVEEAVS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory