PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011383333.1 NCBI__GCF_000009985.1:WP_011383333.1 (687 amino acids)

SeqID: WP_011383333.1 NCBI__GCF_000009985.1:WP_011383333.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [16 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011383333.1 NCBI__GCF_000009985.1:WP_011383333.1
MSQQDEKDVDLAEIDTKGEVFGHGVESRGIFWIAIAFSVFQIVTAAYSPLSSLPVRSIHV
GFLLLMVFALYAAMGRGNPVKVATAWALGGLSFILSLYHLIYEGELVQRSGDPSTTDLVV
GTVMVALVFEAARRLMGWALPALCLVFVAYAAFGEILPAPLGHRGYGFDQIINQYFLGTE
GIFGIPCYVSATYIFLFILFGSFLEQAGMIRLFTDVALGTVGHTKGGPAKVAVVTSGLMG
TINGSGIANVVTTGALTIPLMKRFGYRSEFAGAVEATASMGGQIMPPVMGAVAFIMAETL
NISYAEVCKAAAIPALLYYASAIWMVHLEAGIAGLHGMPKDQCPSAQGALRRQWYLMVPL
AALVYLLLAGFTPMFSGTVGLALTAIVILGSSIAANIGGMAGRVVFWGVLGIASSAFFKL
GINVVVVTVAVLVGVNFFVRGGRETMRMTVRGLVEGARSAVPVGVACTLVGTIIGTMTLT
GIAGSFTQGLVSMSGGSLFLTLILTMIASLILGMGIPTIPTYIITSSLVAPMLFKMGVPL
VVSHMYVFYFGILADLTPPVGLAAFAAASIARSNFFVTGWWAVRVAMAGFVVPFMAVYDP
SLMMVSGSLFDTAYVVIKALLAIGLWGAATIGYLWAPMKMWERAVAVLAAFLLVAAVPLT
DEIGFALSAVFLAWHWMRARRVAIQGA