PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011384964.1 AMB_RS13000 C4-dicarboxylate ABC transporter (486 amino acids)

SeqID: WP_011384964.1 AMB_RS13000 C4-dicarboxylate ABC transporter
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011384964.1 AMB_RS13000 C4-dicarboxylate ABC transporter
MTQFLIANMAPLMFAALVFFLLIGYPVAFALAANGIVFGLVGIELGLLNASLFQALPERI
FGIMRNDTLLAIPFFTFMGLILERSGMAEDLLDTIGQLFGPIRGGLAYAVIFVGALLAAT
TGVVAASVISMGLISLPIMLRYGYDRRVASGVIAASGTLAQIIPPSLVLIIMADQLGRSV
GDMYAGAFIPGFVLTGLYAGFIFLVTMIRPSFAPALPPEARSLRGMGLLLRTVTCLVPPL
ILIFLVLGTIFIGVATPTEGGAMGAAGAMILALMKRKLDWNLMRQAMDTTAKLSCFVVFI
LVGSTVFGLVFRGVNGDLWVEHLMSSLPGGKLGFLIVTNVLMFVLAFFLDFFELAFILVP
LLGPVAEKMGIDLIWFGVLLGVNMQTSFMHPPFGFALFYLRSVAPKTDYIDKITNKLTPK
ITTGQIYWGAVPFVIIQIIMVGLVIAFPDLVTGGIDKAAAVDTSKIQIEVPQGEFGGGMY
GGPDSK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory