PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011385213.1 NCBI__GCF_000009985.1:WP_011385213.1 (598 amino acids)

SeqID: WP_011385213.1 NCBI__GCF_000009985.1:WP_011385213.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 97196714: Aspartyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    Periplasmic            0.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011385213.1 NCBI__GCF_000009985.1:WP_011385213.1
MHVYRSHTCGQLKAADAGIQARLSGWVHRKRDHGNLLFVDLRDHYGITQCVIDVSSPVFA
ALDKARPESVITVTGKVVKRSAETINPRLPTGEIELQVAEVEIQSIADVLPIQVAGDQEY
PEDMRLRYRFLDLRREDVHANMMLRSRVIAYLRQAMIGQGFTEFQTPILTASSPEGARDY
LVPSRIHPGKFYALPQAPQQFKQLLMVAGFDKYFQIAPCFRDEAGRADRSPGEFYQLDFE
MSYVTQDDVFAAIEPVLEGVFKEFGKGRAVTPAPFPRITYADSMLKYGSDKPDLRNPIII
ADVTEPFRGSGFGLFAKLVDKGAVVRAIPAPGAAGQPRSWFDKLNDWARENGAGGLGYIQ
FAADGPKGPIAKNLEPARVEAIKAAANLKDGDAVFFACDKALPAAKFAGLVRTKIGNELD
LLEKDVFKFCWTVDFPMYEINEETGLVEFSHNPFSMPQGGMDALLNQDPLTINAYQYDIV
CNGVELSSGAIRNHRPDIMYKAFEIAGYSAAHVEEHFGGMLNAFKFGAPPHGGSAPGVDR
IVMLLADQPNIREIILFPMNQQAQDLLMQAPAEIAMERLRELHIKVDLPKPKKEVKEG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory