PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011386731.1 AMB_RS22185 ABC transporter ATP-binding protein (533 amino acids)

SeqID: WP_011386731.1 AMB_RS22185 ABC transporter ATP-binding protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011386731.1 AMB_RS22185 ABC transporter ATP-binding protein
MSENTPLLVVDDLAVSFGPVQAVKGVSFTLAKGETLALVGESGSGKSVTALSILQLLPYP
RATHPRGSIRLDGAELVGAPEPALRKVRGGRIAMVFQEPMTSLNPLHSIEAQVGEVLELH
LGLRGSTLRDRVVELLSLVGIPEPEKRLGALPHELSGGQRQRVMIAMALAGEPDILIADE
PTTALDVTIQAQILALLKGLQARLGMALLFITHDLGIVRKMADRVCVMNAGEIVESGPLP
QVFDAPAHPYTQRLLAAEPKGKPHRAGEGEPVVMAARDLKVWFPLKAGLWRKTVGHVKAV
DGISLDLKRGHTIGVVGESGSGKTTLGLALLRLLDSDGEISFGGTRIESMSAGTLRPLRR
QMQMVFQDPYGSLSPRMSVGQIVGEGLEVHEPAMHAAERDRLIAAALEEVGLDPATRDRY
PHEFSGGQRQRIAIARALVLKPKFIVLDEPTSALDVSVQAQIVDLLRDLQARHALAYLFI
SHDLRVVRALADDLLVMKDGKVVEAGRADELFKAPRTAYTRALMAAAFDLEVA