PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011425614.1 NCBI__GCF_000092045.1:WP_011425614.1 (770 amino acids)

SeqID: WP_011425614.1 NCBI__GCF_000092045.1:WP_011425614.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011425614.1 NCBI__GCF_000092045.1:WP_011425614.1
MDHQDKSKADKNLPGGDLDEQALFFHRYPRPGKLEIQATKPLGNQRDLALAYSPGVAAPC
LAIRDNPETAADYTSRANLVAVISNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVF
DIEIDAASVEQMVSTVSSLEPTFGGINLEDIKAPECFEVERRLREKMKIPVFHDDQHGTA
IIVAAAILNGLELAGKAIENVKIVASGAGAAALACLNLLVTLGAKRENIWVHDIEGLVYE
GRTELMDEWKSVYAQKSDTRTLAENIGGADVFLGLSAAGVLKPELLAQMADKPLIMALAN
PTPEIMPDLARAARPDAMICTGRSDFANQVNNVLCFPYIFRGALDCGAETIDEEMKMAAV
RAIAALAREEPSDVAARAYSGETPVFGPDYLIPSPFDPRLILRIAPAVAKAAEQSGVARR
PIQDFDAYLDQLNRFVFRSGFVMKPIFTAAKTAERKRVIFSEGEDERVLRAAQVLLEEGL
AKPILIGRPQVIETRLKRYGLRIRPLQDFEVINPEDDPRFREYVDLYFSLVGRRGVIPEA
ARTIVRTNTTVIGALALRRGEADALICGLEGRYEKHLRDVRQIIGKRKDVRDFSALSLMI
SQRGATFFTDTYVTFNPSAEEVAEATVLAAEEIRRFGITPRAALVSHSNFGSRESESATK
MRNALHLVRETAPDLEVDGEMHGESAITEALRKRVMPDTTLHDEANLLVFPNLDAANITF
GVVKSMTDGLHVGPILLGAALPAHILAPSVTSRGVVNMAALAVVEASQPA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory