PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011654049.1 NCBI__GCF_000009265.1:WP_011654049.1 (1592 amino acids)

SeqID: WP_011654049.1 NCBI__GCF_000009265.1:WP_011654049.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011654049.1 NCBI__GCF_000009265.1:WP_011654049.1
MAARNNPKREKQIESARKIAKATGEAHLDPEILFGRASNDDLELYTPEMLALSAVHSAKE
LAAWNGKAPRVGIDTITDVTPDGIAVSVLSVTDQNMPFLFESVMGEVTSTYRDLFMAVHP
ILVMEKGKAPALYSADHPSDPANRVSHIQLHIAPLNSTQAADLVKRIEKVLEQVRLSVSD
WKPMLSKIDGVIAELAANGASRKKADRDEAVAFLTWLRDENFTFLGMREYVYSGKGAEAK
VERDKGAGLGILSNPDVLVLRTGKDAVTTTPEILAFLDGPDFLIVTKANVKSIVHRRAYM
DYVGVKRFDADGNVTGELRIVGLFTSTAYTSLASEIPLLRSKIEKVKEHFGFDPMSHSGR
MLDNTLESYPRDDLFQIDTTLLASFAEQINDLGDRPRVRVLPRIDHFDRFVSVIVYVPRE
EYDSIVRERIGTYLKTVYDGRVSAYYPAFPEGGVARVHFIIGRSGGKTPRIPQAKLEQVI
REITARWDDRFEALAGVKAPKISVDQAFQDSFTPEETVADLADIGACATGEPLRIHFYHR
QEEEQGRILSLKIFHAGGQLALSRRVPLLENLGFNVVSERTFDIGVPVADGEKKLVVLHD
MELEARNGGEIDLQRYGAALEEGFVAAFAGTIDNDSFNRLILSAGLSARETNVLRAYARY
LRQAGIPYSQDYIATTLDKYPGVAAAIFRLFHDTLDTRLTEKARVKKLAELHQAIETELA
NVPSLDDDRILRRYVNIVDATLRTNYFQKNPDGSPKPMLAFKLDPHLVDGLPEPKPFREM
FVYGVEVEGVHLRFGKVARGGLRWSDRAEDYRTEVLGLVKAQQVKNAVIVPVGAKGGFYP
KKLPVSGSRDETFNAGREAYKTYIRTLLSITDNISGADIVPPKDTVRLDGDDPYFVVAAD
KGTATFSDTANALAQEAGFWLDDAFASGGSAGYDHKKMGITARGAWETVKRHFREMDIDI
QTTPFTVAGVGDMSGDVFGNGMLLSPKIRLIAAFDHRDIVIDPDPDMEKTLTERQRLFDL
PRSSWQDFDKSVLSKGAMIISRSAKSVTLTPEAVAAIGIDKAVATPFEIMTAILKSPVDL
LWFGGIGTYVKASSETDTEVGDRANDPIRITAAEVRAKVIGEGANLGVTQKGRIAYGLKG
GRCNSDAIDNSAGVNTSDVEVNIKIALAAAMHDGRLTRVKRDQLLSSMTSEVATLVLRNN
YLQSLAISLTERKGTANGLELGRFMSVLEGAGQLNRKVETLPDDQTLAERYAAGKPLTRP
EIGVLVSYAKIVLFDALAASDLPDDPYFIATLLNYFPVKMQKSNAGDIASHRLKREIVAT
VLANEAINRGGPSFTVAMMDATAASAPEVVRAAIVARDGFDLTRLWAETDALDGKISGDL
QNRIYEEISHSFIVLTRLLLKTGMTKADMVEVISRLQAALKKLKTAFAGQVAGEVAVRQA
EYSQAGLPEKLAADIASLPIFALVPEIMQIAERTGEPLVRAAENYIAVSQTFRIGRLLAA
GGRILTSDHYENLALARSIDQIASARRDIVISALSDHGKEKLPVQAWHAQDRIRINRILE
ELSSLSDGGDPNLARITVAAGILTDLARDRAR