PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011765266.1 NCBI__GCF_000061505.1:WP_011765266.1 (903 amino acids)

SeqID: WP_011765266.1 NCBI__GCF_000061505.1:WP_011765266.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011765266.1 NCBI__GCF_000061505.1:WP_011765266.1
MAVTDIETLRQQTLKTFTTPGGEIGRYFSLPALEAAGIGPVSRLPVSLRIVLEAVLRRCD
GLKVDIEHVRQLANWEPGGERCAEIPFVVARVVLQDFTGVPLLCDLAAMRDVAAEQGRDP
KRIEPLVPVDLVVDHSVQVDHYGSPIALRQNMELEFERNRERYQFLKWGMQAFDTFGVVP
PGIGIVHQINLEYLFRGLREEGDLYYPDTLVGTDSHTTMINGLGVVGWGVGGIEAEAAML
GQPVYFLTPDVIGVELRGKLPEGVTATDLVLTVTELLRREKVVGKFVEFFGDGTANLTVT
DRATIANMAPEYGATMGFFPVDEKSVAYMRGTGRDERNCALLEAWFRAQQMFGVPRAGEI
DYTRTLVLDLATITPSVAGPKRPQDRIPLGGLGARFTELFSAPTAANGFGRPAETLRERV
PSGRENIALGNGDVLIAAITSCTNTSNPAVLIAAGLLARKAVEAGLRVQPHIKTSLAPGS
RVVTDYLEKAGLLEPLAELGFALAGYGCTTCIGNAGDLAPEFNETIAAHHLVAAAVLSGN
RNFEARIHPSIRANFLASPPLVVAFALAGTVNIDLTRDPLGTGHNGKPVFLRDLWPSSDE
IAAVMPLAMDPANYRQRYADLTRDHDLWNAIAAPAGQRYDWPPSTYIARPPFFTGFGMTP
QPTTAIRSAHALLLLGDSVTTDHISPAGSFRETTPAGQWLSAQGVARKDFNSYGSRRGHH
EVMMRGTFANVRIRNLMLPADGDGNRMEGGYTLLDGQLTTVYEAAMAYQQRGTPTLIFAG
EEYGTGSSRDWAAKGTALLGVRAVIARSFERIHRSNLVGMGVLPLQFKGEDSWPALGLDG
SEQFDLDGLDGELRPLQDVTLVIHRADGDTRRVVLQCRIDTPIEVEYYRHGGILPYVLRE
ILR