PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011808317.1 NCBI__GCF_000015565.1:WP_011808317.1 (553 amino acids)

SeqID: WP_011808317.1 NCBI__GCF_000015565.1:WP_011808317.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 17865747: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011808317.1 NCBI__GCF_000015565.1:WP_011808317.1
MATAHPAPRPMTPEEKKVIFASSLGTVFEWYDFYLYGALASIIAKQFFSGLDAGSAFIFA
LLAFAAGFIVRPFGAIFFGRLGDMIGRKYTFLITILIMGLSTFLVGILPSYATVGVAAPV
ILIALRLLQGLALGGEYGGAATYVAEHSPHGKRGAYTSWIQTTATLGLFLSLAVILGVRT
TLGEEAFASWGWRLPFLLSIVLLGISVWIRLSMSESPAFQKMKAEGKTSKAPLTESFARW
KNLKIVILALLGLTAGQAAVWYSGQFYALLFLTETLKVDGATANILVAVALMIGTPFFVV
FGTLSDRIGRKPIILTGCLLAALTYFPVFGALTKAANPALAEAQAKNQVLVMADASECSF
QFNPTGQVKFTSSCDIAKQVLARASVSYENVPAAAGTPATIKIGETAITSYSSKGLPADE
AKKKDAEFKQAVGDALKAAGYPAKADPERIDKVMIIAIITYLVLLVTMVYGPIAAILVEM
FPTRIRYTSMSLPYHIGNGWFGGLLPTSAFAIVAQTGNMYNGLWFPVVIAGATVVIGGLF
IKDTKDVDIYAND

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory