PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011912997.1 NCBI__GCF_000013785.1:WP_011912997.1 (891 amino acids)

SeqID: WP_011912997.1 NCBI__GCF_000013785.1:WP_011912997.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011912997.1 NCBI__GCF_000013785.1:WP_011912997.1
MPSLDSLKCRRSLEVAGKTYHYYSLPDAAAQLGDISRLPTSLKVLLENLLRWEDDVTVRS
DDLRSLVSWLQTRSSDQEIQYRPARVLMQDFTGVPAVVDLAAMRDAVARAGGDPQKINPL
SPVDLVIDHSVMVDRFGSDQAFEQNVEIEMQRNGERYEFLRWGQQAFDNFSVVPPGTGIC
HQVNLEYLGQVVWTREENGETVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPEVIGFRLSGKLNEGVTATDLVLTVTQMLRKHGVVGKFVEFYGPGLDHLPLADR
ATIGNMAPEYGATCGFFPVDQITIDYLRLTGRNEERIALVEAYSKAQGMWRDSNSPDPVF
TATLELDLAQVQPSVAGPKRPQDRVTLGDIGANFDLLLETGGRKQQADTSVEVKGENFHL
KHGAVVIAAITSCTNTSNPNVLMAAGLVAKKAVERGLKRQPWVKSSLAPGSKVVTDYLER
AGLTRYLDQLGFNLVGYGCTTCIGNSGPLPDAIGQAITDNDLIVSSVLSGNRNFEGRVHP
LVKANWLASPPLVVAFALAGTTRINMDREPLGYDDQNQPVYLKDIWPSSAEIAEAVARID
GEMFRSRYADVFSGDEHWQKIPVSAGDTYQWNASSSYVQNPPYFEDIGQPPAPPADVENA
RVLAVFGDSITTDHISPAGNIKASSPAGLYLQSLGVAPEDFNSYGSRRGNHEVMMRGTFA
NIRIKNEMLGGEEGGNTLYQPSGEKLSIYDAAMRYQAEDVPLVVIAGKEYGTGSSRDWAA
KGTNLLGVKAVIAESFERIHRSNLIGMGVLALQFVGEQTRQSLGLNGTEKLSIRGLGADI
KPRQLLTVDVERQDGSRDSFQVLSRIDTLNEVQYFKAGGILHYVLRQLIGS