PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011951898.1 NCBI__GCF_000016765.1:WP_011951898.1 (669 amino acids)

SeqID: WP_011951898.1 NCBI__GCF_000016765.1:WP_011951898.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.58
    CytoplasmicMembrane    3.41
    Extracellular          0.01
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011951898.1 NCBI__GCF_000016765.1:WP_011951898.1
MARGRRLGRAALAVVALLLLAYAVAWGVRLLPPLGPLRITTHSPADTPWDQWGATAGGTR
FTPAAQITPGNVAHLRVAWRYSTGELARRPEGMQVNSTNETTPILAAGSLITCTPFGRVI
ALDPATGREKWTYDAKVDRSFKLPDQYICRGVSQWRDARAADPAGMCATRIILATVDMRV
IALDARTGRPCAGFGEGGTVRVDPGKLHHVGEVKLAAPAAIVRDRIVIGTSVLDNVRANA
PRGIIRAFDARSGREIWTFDPIPQQGGPDRDWMGDSRRTTGAANVWSVISGDPELDMVYL
PTSSASPDYYGGLRPGDNRHANSVVALDAATGRLVWARQLIHHDIWDYDIPAQPTLVDID
RGGRRIPALVQPTKQGYVFVFDRRTGAPLFPIDEVPVPQGGVPGEWLSPTQPRPRLPRPI
VPQKITPDQAWGFTPWDKAKCRDLIARYRSEGLFTPITERGTITYPAASGGANWGAGAID
PARQVFFINSSRVASVIRLRKRKPGGSGTVQLSATEDVSPMAGTPYEVKREWLLSPFGAP
CTPPPWGGLTAIDLKTGATLWDVPLGTINDRLPIPLPFDVALGTPNIGGPVATAGGVLFI
AATMDRHLRAIDMRTGKELWRDRLPGGSQTTPMSYMAGGRQYVVVASGQHMWFQTPRSDE
IVAYALPMK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory