PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_011952018.1 NCBI__GCF_000016765.1:WP_011952018.1 (1157 amino acids)

SeqID: WP_011952018.1 NCBI__GCF_000016765.1:WP_011952018.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            2.00
    CytoplasmicMembrane    2.00
    Extracellular          2.00
    OuterMembrane          2.00
    Cytoplasmic            2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_011952018.1 NCBI__GCF_000016765.1:WP_011952018.1
MHHDRIVSLDSIYGAEEGPSFMTGIQALVRLPMMQRRLDRRNGLNTAGLVTGYRGSPLGA
YDQQLWKASKYLDAHDIVFQPGLNEDLAATALWGAQMHRAFGRTRADGVFGIWYGKGNGV
DRTGDVFRNANVLGTAPLGGVLAIGGDDHAAQSSMFPHQTDGIFQSVMMPVIQPATVGEI
LSLGLAGFALSRFSGLWVAMKTIAEVVESAASFELPDSYPRFISPAEAVPAHGLNWDPRV
AWPAQRTELERRMIEERLPAVTAWARANEIDRPVLQGGGRRLCVVTVGKAHQDVMQALAN
LGIDEGGARAIGLSVYKVAMSWPLDSASLLAFADGFEEILVVEEKRPVVEEQVKVALFNR
SGARPRVTGKTDAEGRALLPQTLEFDPLMVARAIVGRLPGTADLAARLAAIEARVPTGEV
VPFPARKPFFCSGCPHNSSTKTPEGSIAGGGIGCHVMAVSQPKLKTATFSQMGGEGLQWV
GAAPFSETGHIFQNLGDGTYQHSGLLAIRAAVAAKANITFKILYNDAVAMTGGQPAEGAI
DPARISRQLAAEGVGQIHLVSDDPDRWRAAPDLAEGVTIAHRDDLDRVQRRLREVPGVTA
IIYEQTCAAEKRRRRKRGEFPDPDKRIFINPRVCEGCGDCSVQSNCIAVEPLETGFGRKR
RINQSSCNKDFSCIKGFCPSFVEVEGAVLRKPDGERLKAFEASRFAALPEPERPARDGVA
NIYVAGIGGLGVLTIGALLGTAAHLDGRGATVLDFTGLAQKNGAVVSQVRIAPPGVPIHA
VRIGAGEIDVLLGTDMVVAAGQDVLRRIAADRSVLVLNDDETPTADVVTDRDFALPGAAM
ADTLTRRARATHRLRATSIAEGLFGNNVAANTLLLGHAWQKGLIPLDAEAVRGAIRANGA
AVSLNLRAFDWGRLAAIDLALVEEMAGLAAPAPQTETIDALAARLAAELTAYQDARYAAR
FAALVAAARRAAAGLGREGEDFAEAVARNAYRLMAYKDEYEVARLHADPAFAATLGEQFS
DRRRLSVYLAPPLLSRIDPATGRPRKRRFGPWIFTAFRLLARMKGLRGSWADPFGHSHER
RTERQLIEDYVALVGELAADLSPATLPIATELARLPDAIRGYGPVKAAAIAEAEARKATL
LEALAESRRPSEARAAA